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Target Identification Data Package

This package has 10 modules. The Metabolic Reactions Module has 4 tables. Preview the first five rows of each table or Explore the schema

Metabolic Reactions Module

4 Tables

A sequential representation of the metabolic reactions that drugs are involved in. Depending on available information, this may include metabolizing enzymes, reaction type, substrates, products, pharmacological activity of metabolites, and a structural representation of the biochemical reactions.

Reaction Elements

Reaction elements are found in the reaction_elements table. The element is identified by the element_type and the element_id.

id
type
element_type
element_id
reaction_id
stoichiometry
circulating
3
LeftReactionElement
Drug
1435
2
unknown
5
LeftReactionElement
Drug
1435
3
unknown
6
RightReactionElement
Metabolite
3
3
unknown
7
LeftReactionElement
Drug
1435
4
unknown
8
RightReactionElement
Metabolite
4
4
unknown
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Reaction Enzymes

Describes the enzymes that are involved in the reactions.

id
reaction_id
biodb_id
role
vmax
vmax_unit
km
km_unit
reaction_type
8
2
BE0002793
confirmed
demethylation
9
2
BE0002887
confirmed
demethylation
10
2
BE0003536
confirmed
demethylation
11
2
BE0002433
confirmed
demethylation
12
3
BE0002433
confirmed
3-hydroxylation
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Reactions

Sequential representation of the metabolic reactions that the drug molecule is involved in. This may includes metabolizing enzymes, reaction type, substrates, products, pharmacological activity of metabolites, etc.

id
drug_id
direction
spontaneous
balanced_equation
sequence
reaction_type
activity
major
2
1435
>
0
1
demethylation
unknown
0
3
1435
0
1
3-hydroxylation
unknown
0
4
1435
0
1
4-hydroxylation
unknown
0
5
796
0
2
O-deethylation
unknown
0
6
796
0
2
N-glucuronidation
unknown
0
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Metabolites

A list of chemical substances that are produced as drugs undergo metabolism in the body. Each metabolite is associated with a drug through reaction_elements (for metabolites, the element_type column will be "Metabolite").

id
drugbank_id
name
description
cas_number
activity
moldb_smiles
moldb_formula
moldb_inchi
moldb_inchikey
moldb_average_mass
moldb_mono_mass
1
DBMET00001
N-Desmethylaminopyrine
unknown
CNC1=C(C)N(C)N(C1=O)C1=CC=CC=C1
C12H15N3O
InChI=1S/C12H15N3O/c1-9-11(13-2)12(16)15(14(9)3)10-7-5-4-6-8-10/h4-8,13H,1-3H3
JILCEWWZTBBOFS-UHFFFAOYSA-N
217.267
217.121512117
3
DBMET00003
3-Hydroxymethylantipyrine
unknown
CN1N(C(=O)C=C1CO)C1=CC=CC=C1
C11H12N2O2
InChI=1S/C11H12N2O2/c1-12-10(8-14)7-11(15)13(12)9-5-3-2-4-6-9/h2-7,14H,8H2,1H3
JBJKAGOWIZGVTR-UHFFFAOYSA-N
204.2252
204.089877638
4
DBMET00004
4-Hydroxyantipyrine
unknown
CN1N(C(=O)C(O)=C1C)C1=CC=CC=C1
C11H12N2O2
InChI=1S/C11H12N2O2/c1-8-10(14)11(15)13(12(8)2)9-6-4-3-5-7-9/h3-7,14H,1-2H3
SKVPTPMWXJSBTF-UHFFFAOYSA-N
204.2252
204.089877638
5
DBMET00005
O-Deethylated candesartan
unknown
OC(=O)C1=C2N(CC3=CC=C(C=C3)C3=CC=CC=C3C3=NNN=N3)C(O)=NC2=CC=C1
C22H16N6O3
InChI=1S/C22H16N6O3/c29-21(30)17-6-3-7-18-19(17)28(22(31)23-18)12-13-8-10-14(11-9-13)15-4-1-2-5-16(15)20-24-26-27-25-20/h1-11H,12H2,(H,23,31)(H,29,30)(H,24,25,26,27)
KLCPKPIDOPBIQW-UHFFFAOYSA-N
412.4008
412.128388408
6
DBMET00006
Candesartan N2-glucuronide
unknown
[H][C@@]1(O)[C@@]([H])(O)C([H])(O[C@]([H])(C(O)=O)[C@@]1([H])O)N1N=NN=C1C1=CC=CC=C1C1=CC=C(CN2C(OCC)=NC3=CC=CC(C(O)=O)=C23)C=C1
C30H28N6O9
InChI=1S/C30H28N6O9/c1-2-44-30-31-20-9-5-8-19(28(40)41)21(20)35(30)14-15-10-12-16(13-11-15)17-6-3-4-7-18(17)26-32-33-34-36(26)27-24(39)22(37)23(38)25(45-27)29(42)43/h3-13,22-25,27,37-39H,2,14H2,1H3,(H,40,41)(H,42,43)/t22-,23-,24+,25-,27?/m0/s1
RGWIRVSYWBHDIC-XOEMIVIESA-N
616.5781
616.191776524
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Showing 4 of 4 tables